table of contents
glm(1) | The Computational Morphometry Toolkit | glm(1) |
NAME¶
glm - General Linear ModelSYNOPSIS¶
glm [options] ctlfile imgfile_pattern [ctlfile imgfile_pattern ...]DESCRIPTION¶
Statistical modeling of pixel intensities in multiple images using a General Linear Model.ID age sex
01 20 0
02 30 1
OPTIONS¶
Global Toolkit Options (these are shared by all CMTK tools)¶
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard output.
- --wiki
- Write list of command line options to standard output in MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads and OpenMP).
Input Settings¶
- --crop <string>, -c <string>
- To save space/time, crop images: x0,y0,z0,x1,y1,z2
Model Settings¶
- --normalize, -n
- Normalize model parameters w.r.t. data variances.
- --exp, -e
- Use exponential model rather than linear model.
Selection of Independent Variables¶
- --exclude-constant, -x
- Exclude automatic constant parameter from model.
- --ignore-parameter <string>, -i <string>
- Ignore parameter with given NUMBER (0..n-1). Can be repeated.
- --select-parameter <string>, -s <string>
- Select parameter with given NAME for model. Can be repeated.
Output Settings¶
- --output-pattern <string>, -O <string>
- Filename pattern for output.
%s is replaced with image type ('fstat', 'tstat', or 'param')
%d is replaced with independent variable number (0 for entire model)
%s is replaced with independent variable name ('model' for entire model)
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. RussakoffLICENSE¶
http://www.fsf.org/licensing/licenses/gpl.htmlBUGS¶
Report bugs at http://nitrc.org/projects/cmtk/ACKNOWLEDGMENTS¶
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).Jul 20 2012 | CMTK 2.2.2 |