NAME¶
bowtie-inspect - extracts information from a bowtie index
SYNOPSIS¶
bowtie-inspect [
options]
* <ebwt_base>
DESCRIPTION¶
- <ebwt_base>
- ebwt filename minus trailing .1.ebwt/.2.ebwt
- By default, prints FASTA records of the indexed nucleotide
sequences to standard out. With -n, just prints names. With
-s, just prints a summary of the index parameters and sequences.
With -e, preserves colors if applicable.
OPTIONS¶
- -a/--across <int>
- Number of characters across in FASTA output (default:
60)
- -n/--names
- Print reference sequence names only
- -s/--summary
- Print summary incl. ref names, lengths, index
properties
- -e/--ebwt-ref
- Reconstruct reference from ebwt (slow, preserves
colors)
- -v/--verbose
- Verbose output (for debugging)
- -h/--help
- print detailed description of tool and its options
- --help
- print this usage message
64-bit Built on wr-linux02 Tue Apr 24 11:37:43 UTC 2012 Compiler: gcc version
4.6.3 (Debian 4.6.3-4) Options:
-O3 -Wl,--hash-style=both
-D_FORTIFY_SOURCE=
2 -g -O2
-fstack-protector --param=
ssp-buffer-size=4
-Wformat -Wformat-security -Werror=
format-security
-g -O2 -fstack-protector
--param=
ssp-buffer-size=4 -Wformat
-Wformat-security -Werror=
format-security
-Wl,-z,relro Sizeof {int, long, long long, void*, size_t, off_t}: {4,
8, 8, 8, 8, 8}