NAME¶

ClusterImageStatistics - part of ANTS registration suite

DESCRIPTION¶

Given an ROI and Label Image, find the max and average value in a value image where the value > some user-defined threshold and the cluster size is larger than some min size.

Usage: ./ClusterImageStatistics ImageDimension ROIMask.ext LabelImage.ext OutPrefix MinimumClusterSize ValueImageThreshold Image1WithValuesOfInterest.ext ... ImageNWithValuesOfInterest.ext

ROIMask.ext -- overall region of interest

LabelImage.ext -- labels for the sub-regions, e.g. Brodmann or just unique labels (see

LabelClustersUniquely )

OutputPrefix -- all output

has this prefix

MinimumClusterSize -- the minimum size of clusters of interest

ValueImageThreshold -- minimum value of interest

Image*WithValuesOfInterest.ext

--- image(s) that define the values you want to measure