table of contents
| WHAM-BUILD(1) | User Commands | WHAM-BUILD(1) |
NAME¶
wham-build - Wisconsin's High-Throughput Alignment Method
DESCRIPTION¶
Usage:¶
- wham-build [options]* -l <int> <ref_sequence> <basepath> -l <int> specify the length of short reads <ref_sequence> comma-separated list of fiels with ref sequences <basepath> write wham data to files with this dir/basename
OPTIONS¶
- -v <int>
- report hits with <=v errors (0-5), ignore qualities
- -p <int>
- specify the number of fragments for alignments
- -m <int>
- discard subsequences appearing more than <int> times (default: 100).
- -b <int>
- specify the number of buckets
- -a
- find all valid matches (need much more memory)
- --mask
- keep masked characters in the sequences (default: on)
- --unmask
- discard masked characters in the sequences. Masks are treated as Ns
- --version
- print version information
- -h/--help
- print this usage message
AUTHOR¶
This manpage was written by Nilesh Patra for the Debian
distribution and
can be used for any other usage of the program.
| February 2021 | wham-build 0.1.5 |