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VCF-FIX-NEWLINES(1) User Commands VCF-FIX-NEWLINES(1)

NAME

vcf-fix-newlines - fix newlines in VCF file

SYNOPSIS

vcf-fix-newlines [OPTIONS]

DESCRIPTION

About: Reads in a VCF file with any (commonly used) newline representation and outputs with the

current system's newline representation.

OPTIONS

Report if the file is consistent with the current platform based.
This help message.

Example:

vcf-fix-newlines -i file.vcf vcf-fix-newlines file.vcf.gz > out.vcf cat file.vcf | vcf-fix-newlines > out.vcf
July 2016 vcf-fix-newlines 0.1.14