table of contents
| VFDB_CDHIT_TO_CSV(1) | User Commands | VFDB_CDHIT_TO_CSV(1) |
NAME¶
VFDB_cdhit_to_csv - Parse cdhit results
SYNOPSIS¶
VFDB_cdhit_to_csv [-h] --cluster_file CLUSTER_FILE --infile INFILE --outfile OUTFILE
DESCRIPTION¶
This tool is part of the SRST2 suite.
Output a comma-separated table of alleles, their inferred gene name (from annotation) and their 90% cluster from CD-HIT analysis
OPTIONS¶
optional arguments:¶
- -h, --help
- show this help message and exit
- --cluster_file CLUSTER_FILE
- cd hit output file (.clstr)
- --infile INFILE
- raw sequences file that was input to cdhit (fasta)
- --outfile OUTFILE
- output file (csv)
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| June 2016 | VFDB_cdhit_to_csv 0.1.8 |