NAME¶

simkaMinCore - comparative metagenomics method dedicated to NGS datasets

SYNOPSIS¶

simkaMin [option]

DESCRIPTION¶

[Distance computation options]

sketch

: transform datasets in small sketches of k-mers and their abundance

distance

: compute Jaccard and Bray-Curtis distances between sketches

[Distance matrix manipulation options]

export

: export distance matrices stored in binary format

[Sketch options]

append

: merge multiple sketch files into a single one

info

: list datasets contained in a sketch file

AUTHOR¶

This manpage was written by Shayan Doust for the Debian distribution and can be used for any other usage of the program.