table of contents
| MAPPING_TO_PHANDANGO(1) | User Commands | MAPPING_TO_PHANDANGO(1) |
NAME¶
mapping_to_phandango - create a plot file for visualisation in phandango
SYNOPSIS¶
mapping_to_phandango -s <sam_file> -k <seer_kmers> > phandango.plot
DESCRIPTION¶
Creates a plot file for visualisation in phandango
OPTIONS¶
Required¶
- -s, --sam
- Sam file of kmers mapped to reference (unsorted)
- -k, --kmers
- Kmers that were mapped
Optional¶
- -m, --map
- Minimum mapping quality
- -h, --help
- Displays this message
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| March 2017 | mapping_to_phandango 1.1.2 |