Scroll to navigation

FILTER_SEER(1) User Commands FILTER_SEER(1)

NAME

filter_seer - post filtering of significant kmers

DESCRIPTION

Post filtering of significant kmers.

This program belongs to seer(1) (Sequence Element (kmer) Enrichment Analysis).

OPTIONS

Required options:

file of output from seer

Filtering options:

minimum unadjusted p-value to output
minimum adjusted p-value to output
minimum maf/max 1-maf to output
minimum |beta| to output
remove smaller kmers completely represented elsewhere
output positive effect sizes only

Other options:

field to sort on: chisq, pval, maf or beta
full help message

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

March 2017 filter_seer 1.1.2