table of contents
| TFF_VISUALIZE_OVERLAP.PY(1) | User Commands | TFF_VISUALIZE_OVERLAP.PY(1) |
NAME¶
tff_visualize_overlap.py - display a tractogram and its density map
DESCRIPTION¶
usage: tff_visualize_overlap.py [-h] [--remove_invalid]
- IN_TRACTOGRAM reference
Display a tractogram and its density map (computed from Dipy) in rasmm, voxmm and vox space with its bounding box.
positional arguments:¶
- IN_TRACTOGRAM
- Tractogram filename. Format must be one of trk, tck, vtk, fib, dpy, trx.
- reference
- Reference anatomy for tck/vtk/fib/dpy file support (nii or nii.gz).
options:¶
- -h, --help
- show this help message and exit
- --remove_invalid
- Removes invalid streamlines to avoid the density_mapfunction to crash.
| January 2024 | tff_visualize_overlap.py 0.2.9 |