table of contents
PRODY(1) | User Commands | PRODY(1) |
NAME¶
ProDy - Python Package for Protein Dynamics Analysis
DESCRIPTION¶
usage: prody [-h] [-c] [-v]
- {anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy,clustenm} ...
ProDy: A Python Package for Protein Dynamics Analysis
options:¶
- -h, --help
- show this help message and exit
- -c, --cite
- print citation info and exit
- -v, --version
- print ProDy version and exit
subcommands:¶
- {anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy,clustenm}
- anm
- perform anisotropic network model calculations
- gnm
- perform Gaussian network model calculations
- pca
- perform principal component analysis calculations
- eda
- perform essential dynamics analysis calculations
- align
- align models or structures
- blast
- blast search Protein Data Bank
- biomol
- build biomolecules
- catdcd
- concatenate dcd files
- contacts
- identify contacts between a target and ligand(s)
- fetch
- fetch a PDB file
- select
- select atoms and write a PDB file
- energy
- fix missing atoms, solvate, minimise and calculate energy
- clustenm
- run clustenm(d) simulations
See 'prody <command> -h' for more information on a specific command.
February 2024 | ProDy 2.4.1 |