table of contents
| GFFUTILS-CLI_CREATE(1) | User Commands | GFFUTILS-CLI_CREATE(1) |
NAME¶
gffutils-cli_create - Create a database
DESCRIPTION¶
usage: gffutils-cli create [-h] [-o OUTPUT] [-f] [-q] [-m MERGE]
- [--disable-infer-genes]
- [--disable-infer-transcripts] filename
Create a database.
positional arguments:¶
- filename
- GFF or GTF file to use
options:¶
- -h, --help
- show this help message and exit
- -o OUTPUT, --output OUTPUT
- Database to create. Default is to append ".db" to the end of the input filename (default: -)
- -f, --force
- Overwrite an existing database (default: False)
- -q, --quiet
- Suppress the reporting of timing information when creating the database (default: False)
- -m MERGE, --merge MERGE
- Merge strategy to be used if if duplicate IDs are found. (default: 'merge')
- --disable-infer-genes
- Disable inferring of gene extents for GTF files. Use this if your GTF file already has "gene" featuretypes (default: False)
- --disable-infer-transcripts
- Disable inferring of transcript extents for GTF files. Use this if your GTF file already has "transcript" featuretypes (default: False)
| April 2024 | gffutils-cli create 0.13 |