table of contents
| PYENSEMBL(1) | User Commands | PYENSEMBL(1) |
NAME¶
pyensembl - installs data from the Ensembl genome database
DESCRIPTION¶
usage: Manipulate pyensembl's local cache.
- pyensembl {install, delete, delete-sequence-cache} [--release XXX --species human...]
To install particular Ensembl human release(s):¶
- pyensembl install --release 75 77
To install particular Ensembl mouse release(s):¶
- pyensembl install --release 75 77 --species mouse
To delete all downloaded and cached data for a particular Ensembl release:¶
- pyensembl delete-all-files --release 75 --species human
To delete only cached data related to transcript and protein sequences:¶
- pyensembl delete-index-files --release 75
To list all installed genomes:¶
- pyensembl list
To install a genome from source files:¶
- pyensembl install
- --reference-name "GRCh38" --gtf URL_OR_PATH --transcript-fasta URL_OR_PATH --protein-fasta URL_OR_PATH
pyensembl: error: the following arguments are required: action
AUTHOR¶
This manpage was written by Nilesh Patra for the Debian
distribution and
can be used for any other usage of the program.
| May 2021 | pyensembl 1.9.1+ds |