table of contents
| PICOPORE-RENAME(1) | User Commands | PICOPORE-RENAME(1) |
NAME¶
picopore-rename - renaming groups and datasets within Oxford Nanopore Technologies FAST5 files
SYNOPSIS¶
[-h] -p PATTERN -r REPLACEMENT [-v] [-y] [-t INT] [--prefix STR] [--skip-root] [--print-every INT] [input [input ...]]
DESCRIPTION¶
A tool for renaming groups and datasets within Oxford Nanopore Technologies FAST5 files
OPTIONS¶
positional arguments:¶
- input
- list of directories or fast5 files to shrink
optional arguments:¶
- -h, --help
- show this help message and exit
- -p PATTERN, --pattern PATTERN
- String or regex to replace
- -r REPLACEMENT, --replacement REPLACEMENT
- String or regex replacement for PATTERN
- -v, --version
- show version number and exit
- -y
- skip confirm step
- -t INT, --threads INT
- number of threads (Default: 1)
- --prefix STR
- add prefix to output files to prevent overwrite
- --skip-root, --no-skip-root
- ignore files in root input directories for albacore realtime compression (Default: --no-skip-root)
- --print-every INT
- print a dot every approximately INT files, or -1 to silence (Default: 100)
AUTHOR¶
This manpage was written by Andreas Tille for the Debian
distribution and
can be used for any other usage of the program.
| June 2020 | picopore-rename 1.2.0 |