NAME¶

pxtgen - generate all tree topologies for n taxa

SYNOPSIS¶

pxtgen [OPTIONS]...

DESCRIPTION¶

Generate all tree topologies for n (<= 10) taxa. Random tree samples are a-coming.

OPTIONS¶

-n, --ntax=INT

number of taxa

-r, --rooted

whether generated trees are rooted (default: false)

-c, --count

give the number of possible trees for n taxa and exit

-l, --label=STRING

prefix label for taxon names (default: 't')

-o, --outf=FILE

output file, STOUT otherwise

-h, --help

display this help and exit

-V, --version

display version and exit

-C, --citation

display phyx citation and exit

CITATION¶

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR¶

Written by Joseph W. Brown

REPORTING BUGS¶

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

COPYRIGHT¶

Copyright © 2021-2021 FePhyFoFum License GPLv3