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PXSSTAT(1) User Commands PXSSTAT(1)

NAME

pxsstat - calculate multinomial alignment test statistics

SYNOPSIS

pxsstat [OPTIONS]...

DESCRIPTION

Calculates multinomial alignment test statistics. Currently only calculates the test statistic from Bollback (2002) MBE. This will take fasta, fastq, phylip, and nexus formats from a file or STDIN.

OPTIONS

input seq file, STDIN otherwise
output sequence file, STOUT otherwise
display this help and exit
display version and exit
display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Joseph W. Brown

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

Copyright © 2017-2021 FePhyFoFum License GPLv3

July 2023 pxsstat 1.3