NAME¶

pxssort - sort sequences by id or length

SYNOPSIS¶

pxssort [OPTIONS]...

DESCRIPTION¶

Sort sequences by id or length. This will take fasta, phylip, and nexus formats from a file or STDIN.

OPTIONS¶

-s, --seqf=FILE

input sequence file, STDIN otherwise

-b, --sortby

what to sort by: 1:id (default) 2:id rev 3:length (<) 4:length (>)

-o, --outf=FILE

output sequence file, STOUT otherwise

-h, --help

display this help and exit

-V, --version

display version and exit

-C, --citation

display phyx citation and exit

CITATION¶

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR¶

Written by Stephen A. Smith (blackrim), Joseph W. Brown

REPORTING BUGS¶

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

COPYRIGHT¶

Copyright © 2017-2021 FePhyFoFum License GPLv3