NAME¶

pxpoly - randomly sample polytomies to generate a binary tree

SYNOPSIS¶

pxpoly [OPTIONS]...

DESCRIPTION¶

Randomly sample polytomies to generate a binary tree. Currently only works with rooted trees (checked) Output is written in newick format.

OPTIONS¶

-t, --treef=FILE

input tree file, STDIN otherwise

-x, --seed=INT

random number seed, clock otherwise

-o, --outf=FILE

output file, STOUT otherwise

-h, --help

display this help and exit

-V, --version

display version and exit

-C, --citation

display phyx citation and exit

CITATION¶

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR¶

Written by Joseph W. Brown

REPORTING BUGS¶

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

COPYRIGHT¶

Copyright © 2021-2021 FePhyFoFum License GPLv3