table of contents
PXMRCA(1) | User Commands | PXMRCA(1) |
NAME¶
pxmrca - get number of descendant tips of internal nodes by mrca statements
SYNOPSIS¶
pxmrca [OPTIONS]...
DESCRIPTION¶
Get the number of descendant tips of internal nodes specified by mrca statements. This will take a newick- or nexus-formatted tree from a file or STDIN, and an MRCA file with format: MRCANAME = tip1 tip2 ...
OPTIONS¶
- -t, --treef=FILE
- input newick tree file, STDIN otherwise
- -m, --mrca=FILE
- file containing MRCA declarations
- -o, --outf=FILE
- output newick file, STOUT otherwise
- -h, --help
- display this help and exit
- -V, --version
- display version and exit
- -C, --citation
- display phyx citation and exit
CITATION¶
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
AUTHOR¶
Written by Stephen A. Smith (blackrim)
REPORTING BUGS¶
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>
COPYRIGHT¶
Copyright © 2013-2021 FePhyFoFum License GPLv3
July 2023 | pxmrca 1.3 |