table of contents
| PXLSTR(1) | User Commands | PXLSTR(1) |
NAME¶
pxlstr - print tree summary
SYNOPSIS¶
pxlstr [OPTIONS]...
DESCRIPTION¶
Print tree summary. By default returns all properties. Alternatively choose 1 property. This will take a newick- or nexus-formatted tree from a file or STDIN.
OPTIONS¶
- -t, --treef=FILE
- input tree file, STDIN otherwise
- -r, --rooted
- return whether the tree is rooted
- -a, --age
- return the height of root (must be rooted and ultrametric)
- -n, --ntips
- return the number of terminals
- -u, --ultrametric
- return whether tree is ultrametric
- -b, --binary
- return whether tree is binary
- -l, --length
- return the length of the tree
- -i, --tiplabels
- return all tip labels (one per line)
- -v, --rtvar
- return root-to-tip variance
- -o, --outf=FILE
- output tree stats file, STOUT otherwise
- -h, --help
- display this help and exit
- -V, --version
- display version and exit
- -C, --citation
- display phyx citation and exit
CITATION¶
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
AUTHOR¶
Written by Joseph W. Brown
REPORTING BUGS¶
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>
COPYRIGHT¶
Copyright © 2016-2021 FePhyFoFum License: GPLv3
| July 2023 | pxlstr 1.3 |