NAME¶

pxcolt - collapse edges with support below some threshold

SYNOPSIS¶

pxcolt [OPTIONS]...

DESCRIPTION¶

Collapse edges with support below some threshold. If annotated Nexus, may require passing in the support identifier (-s). This will take a newick- or nexus-formatted tree from a file or STDIN. Output is written in newick format.

OPTIONS¶

-t, --treef=FILE

input tree file, STDIN otherwise

-l, --limit=DOUBLE

minimum support threshold as proportion (default = 0.5)

-o, --outf=FILE

output file, STOUT otherwise

-h, --help

display this help and exit

-V, --version

display version and exit

-C, --citation

display phyx citation and exit

CITATION¶

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR¶

Written by Joseph W. Brown

REPORTING BUGS¶

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

COPYRIGHT¶

Copyright © 2018-2021 FePhyFoFum License GPLv3