Scroll to navigation

PDB_FETCH(1) User Commands PDB_FETCH(1)

NAME

pdb_fetch - manual page for pdb_fetch 2.5.1

DESCRIPTION

pdb_fetch Invalid PDB code: '--help'

Downloads a structure in PDB format from the RCSB website.

Allows downloading the (first) biological structure if selected.

Usage:

python pdb_fetch.py [-biounit] <pdb code>

Example:

# downloads unit cell, all 6 chains
# downloads biounit, 2 chains

This program is part of the `pdb-tools` suite of utilities and should not be distributed isolatedly. The `pdb-tools` were created to quickly manipulate PDB files using the terminal, and can be used sequentially, with one tool streaming data to another. They are based on old FORTRAN77 code that was taking too much effort to maintain and compile. RIP.

December 2023 pdb_fetch 2.5.1