NAME¶

vcfnullgenofields

SYNOPSIS¶

vcfnullgenofields options

DESCRIPTION¶

Makes the FORMAT for each variant line the same (uses all the FORMAT fields described in the header). Fills out per-sample fields to match FORMAT. Expands GT values of `.' with number of alleles based on ploidy (eg: `./.' for dipolid).

OPTIONS¶

options:


    -p, --ploidy N   the polidy of missing/null GT fields (default=2)


    -L, --expand_GL  fill in missing GL fields with 0 values (eg: 0,0,0 for diploid 2 alleles)
Type: transformation
    

EXIT VALUES¶

0

Success

not 0

Failure

SEE ALSO¶

vcflib(1)

OTHER¶

LICENSE¶

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS¶

Erik Garrison and vcflib contributors.