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VCFGLBOUND(1) vcfglbound (VCF transformation) VCFGLBOUND(1)

NAME

vcfglbound

SYNOPSIS

vcfglbound options

DESCRIPTION

Adjust GLs so that the maximum GL is 0 by dividing all GLs for each sample by the max.

OPTIONS

Then cap (bound) at N (e.g. -10).options:

-b, --bound N Bound GLs to this limit.
-x, --exclude-broken If GLs are > 0, remove site. Type: transformation

EXIT VALUES

0
Success
Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS

Erik Garrison and vcflib contributors.

vcfglbound (vcflib)