table of contents
VCFEVENREGIONS(1) | vcfevenregions (VCF transformation) | VCFEVENREGIONS(1) |
NAME¶
vcfevenregions
SYNOPSIS¶
vcfevenregions options
DESCRIPTION¶
Generates a list of regions, e.g. chr20:10..30 using the variant density information provided in the VCF file to ensure that the regions have even numbers of variants. This can be use to reduce the variance in runtime when dividing variant detection or genotyping by genomic coordinates.
OPTIONS¶
-
options:
-f, --fasta-reference REF FASTA reference file to use to obtain primer sequences.
-n, --number-of-regions N The number of desired regions.
-p, --number-of-positions N The number of positions per region.
-o, --offset N Add an offset to region positioning, to avoid boundary
related artifacts in downstream processing.
-l, --overlap N The number of sites to overlap between regions. Default 0.
-s, --separator SEQ Specify string to use to separate region output. Default '-' Type: transformation
EXIT VALUES¶
- 0
- Success
- not 0
- Failure
SEE ALSO¶
OTHER¶
LICENSE¶
Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.
AUTHORS¶
Erik Garrison and vcflib contributors.
vcfevenregions (vcflib) |