NAME¶

vcfannotate

SYNOPSIS¶

vcfannotate options []

DESCRIPTION¶

Intersect the records in the VCF file with targets provided in a BED file. Intersections are done on the reference sequences in the VCF file. If no VCF filename is specified on the command line (last argument) the VCF read from stdin.

OPTIONS¶

options:


    -b, --bed   use annotations provided by this BED file


    -k, --key   use this INFO field key for the annotations


    -d, --default  use this INFO field key for records without annotations
Type: transformation
    

EXIT VALUES¶

0

Success

not 0

Failure

SEE ALSO¶

vcflib(1)

OTHER¶

LICENSE¶

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS¶

Erik Garrison and vcflib contributors.