NAME¶

vcf2dag

SYNOPSIS¶

vcf2dag options []

DESCRIPTION¶

Modify VCF to be able to build a directed acyclic graph (DAG)

OPTIONS¶

options:


    -r, --reference FILE         FASTA reference file.
Modify the VCF file so that homozygous regions are included as REF/. calls.
For each ref and alt allele, assign an index.  These steps are sufficient to
enable use of the VCF as a DAG (specifically a partially-ordered graph).
Type: transformation
    

EXIT VALUES¶

0

Success

not 0

Failure

SEE ALSO¶

vcflib(1)

OTHER¶

LICENSE¶

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS¶

Erik Garrison and vcflib contributors.