NAME¶

jaligner - Smith-Waterman algorithm with Gotoh's improvement

SYNOPSIS¶

jaligner <s1> <s2> <matrix> <open> <extend>

Or just type jaligner to see the GUI.

EXAMPLES¶

jaligner p53_{human,mouse}.fasta BLOSUM62 10 0.5

HOMEPAGE¶

<http://jaligner.sourceforge.net/>