table of contents
SIM2GFF(1) | General Commands Manual | SIM2GFF(1) |
NAME¶
sim2gff - Converts SIM file into GFF formatted records
SYNOPSIS¶
sim2gff [-frxyHh] sim_file > gff_file
DESCRIPTION¶
This manual page documents briefly the sim2gff command.
sim2gff is a program written in Perl that converts SIM file into GFF formatted records (for use with gff2aplot and gff2javaplot).
OPTIONS¶
- -h, --help
- Show summary of options.
- -f
- Output is written to a file named <sim_file>.gff.
- -r
- Interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis).
- -x <name>
- Specify the species name for species1 (default: "Seq1").
- -y <name>
- Specify the species name for species2 (default: "Seq2").
- -H
- Use the fasta file headers for species labels.
EXIT STATUS¶
The following perl-like exit status are returned:
0 Error
1 Successful completion
SEE ALSO¶
AUTHOR¶
sim2gff was written by Thomas Wiehe <twiehe@imb-jena.de>.
This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others).
Mon, 21 Mar 2005 21:44:15 -0300 |