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BOWTIE-ALIGN-S(1) User Commands BOWTIE-ALIGN-S(1)

NAME

bowtie-align-s - ultrafast memory-efficient short read aligner

DESCRIPTION

usage: bowtie [-h] [-b | -i] [--verbose] [--debug] [--large-index]
[--index INDEX]

optional arguments:

-h, --help
show this help message and exit

-b, --build

-i, --inspect

--verbose

--debug

--large-index

--index INDEX

64-bit Built on Debian-reproducible Thu, 05 Sep 2019 17:49:44 +0200 Compiler: gcc version 9.2.1 20190827 Options: -O3 -Wl,--hash-style=both -DWITH_TBB -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=.=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=.=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -Wl,-z,relro -Wl,-z,now Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}

September 2019 bowtie-align-s version 1.2.3