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BP_TREE2PAG(1p) User Contributed Perl Documentation BP_TREE2PAG(1p)


bp_tree2pag - convert Bio::TreeIO parseable format trees to pagel format


 bp_tree2pag -if nexus -i > file.pag

 # OR pipe in through STDIN, and use newick format instead

 cat file.newick | bp_tree2pag -if newick > file.nh

 # OR specify an output and input

 bp_tree2pag -o file.pag -i file.newick


Convert TreeIO parseable files into Pagel format tree files. Be warned that pagel format only really supports a single tree per file so. Also Pagel parsing is not yet available in bioperl.
2020-10-28 perl v5.30.3