table of contents
| BAMFIXFLAGS.PY(1) | User Commands | BAMFIXFLAGS.PY(1) |
NAME¶
bamfixflags.py - filter readgroup(s) from a BAM file
SYNOPSIS¶
bamfixflags.py [-h] [-i BAM] -l FILE [-n INT] [-S] [-b] [-u]
DESCRIPTION¶
filter readgroup(s) from a BAM file
OPTIONS¶
optional arguments:¶
- -h, --help
- show this help message and exit
- -i BAM, --input BAM
- Input BAM file
- -l FILE, --lib_info FILE
- SVTyper JSON file of library information
- -n INT
- Output first n alignments and quit
- -S
- Input is SAM format
- -b
- Output BAM format
- -u
- Output uncompressed BAM format (implies -b)
AUTHOR¶
This manpage was written by Andreas Tille for the Debian
distribution and
can be used for any other usage of the program.
| June 2020 | bamfixflags.py 0.0.1+git20170413.ccd079d |