NAME¶

vcf-convert - convert between VCF versions

SYNOPSIS¶

cat in.vcf | vcf-convert [OPTIONS] > out.vcf

DESCRIPTION¶

About: Convert between VCF versions, currently to VCFv4.0 only.

OPTIONS¶

-r, --refseq <file>

The reference sequence in samtools faindexed fasta file. (Not required with SNPs only.)

-v, --version <string>

4.0

-h, -?, --help

This help message.