table of contents
EFILTER(1) | NCBI Entrez Direct User's Manual | EFILTER(1) |
NAME¶
efilter - filter and/or sort NCBI Entrez search results
SYNOPSIS¶
efilter [-help] [-query str] [-days N] [-datetype field] [-mindate date] [-maxdate date] [-pub type] [-journal name] [-released when] [-country name] [-feature type] [-location type] [-molecule type] [-organism type] [-source type] [-division code] [-keyword purpose] [-purpose why] [-status alive] [-type type] [-class class]
DESCRIPTION¶
efilter filters and/or sorts results from a previous Entrez Direct search.
OPTIONS¶
Query Specification¶
- -query str
- Limit results to those matching the given query string.
Date Constraint¶
- -days N
- Keep only results from the past N days.
- -datetype field
- Which date field (in abbreviated form) to consider.
- -mindate date
- Start of date range.
- -maxdate date
- End of date range.
Publication Filters¶
- -pub type
- abstract, clinical, english, free, historical, journal, medline, preprint, published, retracted, retraction, review, or structured.
- -journal name
- pnas, "j bacteriol", ...
- -released when
- last_week, last_month, last_year, or prev_years.
Sequence Filters¶
- -country name
- usa:minnesota, united_kingdom, "pacific ocean", ...
- -feature type
- gene, mrna, cds, mat_peptide, ...
- -location type
- mitochondrion, chloroplast, plasmid, or plastid.
- -molecule type
- genomic, mrna, trna, rrna, or ncrna.
- -organism type
- animals, archaea, bacteria, eukaryotes, fungi, human, insects, mammals, plants, prokaryotes, protists, rodents, viruses, ...
- -source type
- genbank, insd, pdb, pir, refseq, select, swissprot, or tpa.
- -division code
- Three-letter GenBank division code: bct, con, env, est, gss, htc, htg, inv, mam, pat, phg, pln, pri, rod, sts, syn, una, vrl, or vrt.
- -keyword purpose
- -purpose why
- baseline or targeted.
Gene Filters¶
- -status alive
- -type type
- coding or pseudo.
SNP Filters¶
- -class class
- acceptor, donor, coding, frameshift, indel, intron, missense, nonsense, or synonymous.
Assembly Filters¶
- -status status
- latest or replaced.
Miscellaneous Arguments¶
- -help
- Print usage information.
SEE ALSO¶
combine-uid-lists(1), difference-uid-lists(1), esearch(1), nquire(1), exclude-uid-lists(1), intersect-uid-lists(1).
2023-02-18 | NCBI |