SIMPAL(1) | User Contributed Perl Documentation | SIMPAL(1) |
NAME¶
simpal -- proof of concept
SYNOPSIS¶
simpal.pl [options] <ref seq> <target seq> [target2 target3 ...]
OPTIONS¶
Set options by something like --tolerance=5 or -t 5 or whatever. maxLoop -- specifies max separation for the ends of the palindromes maxDistance -- specifies the maximum difference in palindrome length when comparing palindromes tolerance -- max permissible misses in palindromes between sequences
Setting either to -1 means no limit
seedlength -- length of seeds to use for finding palindromes
2021-08-15 | perl v5.32.1 |