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KALIGN(1) User Commands KALIGN(1)

NAME

kalign - Global and progressive multiple sequence alignment

SYNOPSIS

kalign-avx2 -i <seq file> -o <out aln>

DESCRIPTION

Kalign (3.2.3)

OPTIONS

--format
: Output format. [Fasta]
--reformat
: Reformat existing alignment. [NA]
--version (-V/-v)
: Prints version. [NA]

EXAMPLES

Passing sequences via stdin:
cat input.fa | kalign -f fasta > out.afa

Combining multiple input files:

kalign seqsA.fa seqsB.fa seqsC.fa -f fasta > combined.afa

COPYRIGHT

Copyright © 2006,2019,2020 Timo Lassmann

This program comes with ABSOLUTELY NO WARRANTY; for details type: `kalign -showw'.
This is free software, and you are welcome to redistribute it under certain conditions; consult the COPYING file for details.

Please cite:

Lassmann, Timo. "Kalign 3: multiple sequence alignment of large data sets." Bioinformatics (2019) https://doi.org/10.1093/bioinformatics/btz795

AUTHOR

This manpage was written by Nilesh Patra for the Debian distribution and can be used for any other usage of the program.
August 2020 kalign 3.2.3