table of contents
GTHSPLIT(1) | GTHSPLIT(1) |
NAME¶
gthsplit - split GenomeThreader output files
SYNOPSIS¶
gthsplit -alignmentscore | -coverage [option ...] [file ...]
DESCRIPTION¶
Split GenomeThreader output files containing intermediate results.
OPTIONS¶
-alignmentscore
split according to the overall alignment score (scr)
default: no
-coverage
split according to coverage (cov) default: no
-range
set the percentage range used to create the sets default:
5
-minalignmentscore
set the minimum alignment score for spliced alignments to
be included into the set of spliced alignments default: 0.00
-maxalignmentscore
set the maximum alignment score for spliced alignments to
be included into the set of spliced alignments default: 1.00
-mincoverage
set the minimum coverage for spliced alignments to be
included into the set of spliced alignments default: 0.00
-maxcoverage
set the maximum coverage for spliced alignments to be
included into the set of spliced alignments default: 9999.99
-v
be verbose default: no
-gzip
write gzip compressed output file(s) default: no
-bzip2
write bzip2 compressed output file(s) default: no
-force
force writing to split files default: no
-help
display help and exit
-version
display version information and exit