table of contents
BP_MULTI_HMMSEARCH(1p) | User Contributed Perl Documentation | BP_MULTI_HMMSEARCH(1p) |
NAME¶
multi_hmmsearch - perform a hmmsearch into multiple FASTA files
using
an INDEX file
SYNOPSIS¶
multi_hmmsearch -p hmm_file [-i] -f index_file
DESCRIPTION¶
Not technically a Bio::Tools::Run script as this doesn't use any Bioperl or Bioperl-run components but it's useful.
Mandatory Options:¶
-p HMM profile to use for the search. -f INDEX file that contains a list of FASTA files for the multiple search.
Special Options:¶
-i Create a new index file with the resulting hmms files. This is useful if you want to pass this list as input arguments into another programs. -h Show this documentation.
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
http://redmine.open-bio.org/projects/bioperl/
AUTHOR¶
Mauricio Herrera Cuadra <mauricio-at-open-bio.org>
2024-11-20 | perl v5.40.0 |