|BP_MULTI_HMMSEARCH(1p)||User Contributed Perl Documentation||BP_MULTI_HMMSEARCH(1p)|
multi_hmmsearch - perform a hmmsearch into multiple FASTA files
an INDEX file
multi_hmmsearch -p hmm_file [-i] -f index_file
Not technically a Bio::Tools::Run script as this doesn't use any Bioperl or Bioperl-run components but it's useful.
-p HMM profile to use for the search. -f INDEX file that contains a list of FASTA files for the multiple search.
-i Create a new index file with the resulting hmms files. This is useful if you want to pass this list as input arguments into another programs. -h Show this documentation.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
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Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
Mauricio Herrera Cuadra <mauricio-at-open-bio.org>