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| SNAP(1) |
User Commands |
SNAP(1) |
NAME¶
snap-hmm - Semi-HMM-based Nucleic Acid Parser
SYNOPSIS¶
snap-hmm [options] <HMM file> <FASTA
file> [options]
OPTIONS¶
- -help
- report useful information
- -lcmask
- treat lowercase as N
- -plus
- predict on plus strand only
- -minus
- predict on minus strand only
- -gff
- output annotation as GFF
- -ace
- output annotation as ACED
- -quiet
- do not send progress to STDERR
- -aa <file>
- create FASTA file of proteins
- -tx <file>
- create FASTA file of transcripts
- -xdef <file>
- external definitions
- -name <string>
- name for the gene [default snap]
