table of contents
mia-3dlandmarks-transform(1) | General Commands Manual | mia-3dlandmarks-transform(1) |
NAME¶
mia-3dlandmarks-transform - Transform 3D landmark positions.SYNOPSIS¶
mia-3dlandmarks-transform -i <in-file> -o <out-file> -t <transformation> [options]DESCRIPTION¶
mia-3dlandmarks-transform Transform the locations of the landmarks by means of a given 3D transformation. Note, landmark transformations do the inverse of an image transformation (in a manner of speaking), i.e. given a transformation V(x) in an image transformation the pixel intensity at x is set to the original intensity at V(x), while a landmark at x is moved to V(x).OPTIONS¶
- -i --in-file=(input, required); io
- input landmark set For supported file types see PLUGINS:3dlandmarklist/io
- -o --out-file=(output, required); io
- output landmark set For supported file types see PLUGINS:3dlandmarklist/io
- -t --transformation=(input, required); io
- transformation file For supported file types see PLUGINS:3dtransform/io
Help & Info¶
- -V --verbose=warning
- verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
info ‐ Low level messages
trace ‐ Function call trace
fail ‐ Report test failures
warning ‐ Warnings
error ‐ Report errors
debug ‐ Debug output
message ‐ Normal messages
fatal ‐ Report only fatal errors
- --copyright
- print copyright information
- -h --help
- print this help
- -? --usage
- print a short help
- --version
- print the version number and exit
Processing¶
- --threads=-1
- Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
PLUGINS: 3dlandmarklist/io¶
- datapool
- Virtual IO to and from the internal data pool
Recognized file extensions: .@
- lmx
- IO plugin to load and store 3D landmark lists
Recognized file extensions: .lmx
PLUGINS: 3dtransform/io¶
- bbs
- Binary (non-portable) serialized IO of 3D transformations
Recognized file extensions: .bbs
- datapool
- Virtual IO to and from the internal data pool
Recognized file extensions: .@
- vista
- Vista storage of 3D transformations
Recognized file extensions: .v, .v3dt
- xml
- XML serialized IO of 3D transformations
Recognized file extensions: .x3dt
EXAMPLE¶
Transform the landmarks given in input.lmx by applyning the transfromation stored in trans.v and store the result in output.lmxmia-3dlandmarks-transform -i input.lmx -t trans.v -o output.lmx
AUTHOR(s)¶
Gert WollnyCOPYRIGHT¶
This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.v2.4.3 | USER COMMANDS |