table of contents
other versions
- stretch 2.1.1+dfsg-1
- testing 2.1.3+dfsg-2
- stretch-backports 2.1.3+dfsg-1~bpo9+1
- unstable 2.1.3+dfsg-2
MHAP(1) | User Commands | MHAP(1) |
NAME¶
mhap - probabilistic sequence overlappingSYNOPSIS¶
mhap -s<fasta/dat from/self file> [-q<fasta/dat to file>] [-f<kmer filter list, must be sorted>]java -server -Xmx<memory> -jar $(which mhap) -s<fasta/dat from/self file> [-q<fasta/dat to file>] [-f<kmer filter list, must be sorted>]
generate precomputed binaries:
java -server -Xmx<memory> -jar $(which mhap) -p<directory of fasta files> -q <output directory> [-f<kmer filter list, must be sorted>]
DESCRIPTION¶
MHAP (MinHash Alignment Protocol) is a tool for finding overlaps of long-read sequences (such as PacBio or Nanopore) in bioinformatics.OPTIONS¶
- -h --help
- Show summary of available options.
- --version
- Displays the version.
July 2016 | mhap |