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MAPMERS(1) |
User Commands |
MAPMERS(1) |
NAME¶
mapMers - report statistics of mapping kmers to sequences
SYNOPSIS¶
mapMers {-stats|-regions|-details}
-m mersize -mers mers
-seq fasta
OPTIONS¶
- -stats
- reports the mean, minimum, and maximum for each sequence, along with a
log2 histogram of the counts
- -regions
- reports regions with kmer coverage
- -details
- reports the forward and reverse count in the database for each kmer in the
sequence
- -m mersize
- -mers mers
- the meryl(1) database
- -seq fasta
- input sequence file