CPGREPORT(1e) | EMBOSS Manual for Debian | CPGREPORT(1e) |
NAME¶
cpgreport - Identify and report CpG-rich regions in nucleotide sequence(s)SYNOPSIS¶
cpgreport -sequence seqall -score integer -outfile outfile -outfeat featout
cpgreport -help
DESCRIPTION¶
cpgreport is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:CpG Islands" command group(s).OPTIONS¶
Input section¶
-sequence seqallRequired section¶
-score integerThis sets the score for each CG sequence found. A value
of 17 is more sensitive, but 28 has also been used with some success. Default
value: 17
Output section¶
-outfile outfile-outfeat featout
File for output features
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
cpgreport is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
05/11/2012 | EMBOSS 6.4.0 |