table of contents
statistics(1) | The Computational Morphometry Toolkit | statistics(1) |
NAME¶
statistics - Image statisticsSYNOPSIS¶
statistics [options] ImageFile0 [ImageFile1 ...]DESCRIPTION¶
Statistical computations on image pixel intensities, i.e., means and standard deviationsOPTIONS¶
Global Toolkit Options (these are shared by all CMTK tools)¶
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard output.
- --wiki
- Write list of command line options to standard output in MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options¶
- --label, -l
- Interpret voxel values as labels
- --gray, -g
- Interpret voxel values as gray values (default) [This is the default]
- --log, -L
- Apply log() function to data
- --exp, -e
- Apply exp() function to data
- --num-bins <integer>, -n <integer>
- Number of histogram bins. [Default: 256]
- --column, -C
- Write statistics in column format rather than line format.
- --e-notation, -E
- Write floating point numbers in #e# notation (i.e., 1e-3 instead of 0.001)
- --mask <string>, -m <string>
- Analyze region based on binary mask file [Default: disabled]
- --Mask <string>, -M <string>
- Analyze regions separately based on mask file (label field). [Default: NONE]
- --mask-output-all-up-to <integer>
- Output results for all mask values up to given value, even such that do not actually appear in the mask. [Default: 0]
- --percentile <double>, -p <double>
- Add value to list of percentile to compute.
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav HalchenkoLICENSE¶
http://www.fsf.org/licensing/licenses/gpl.htmlBUGS¶
Report bugs at http://nitrc.org/projects/cmtk/ACKNOWLEDGMENTS¶
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.Jan 13 2017 | CMTK 3.3.1 |