NAME¶
csg_map - Part of the VOTCA package
SYNOPSIS¶
csg_map [
OPTION] [
OPTIONPARAMETERS]
DESCRIPTION¶
Map a reference trajectory to a coarse-grained trajectory. This program can be
used to map a whole trajectory or to create an initial configuration for a
coarse-grained run only.
Please visit the program site at __
http://www.votca.org__.
OPTIONS¶
Allowed options:
- -h [ --help ]
- produce this help message
- --top arg
- atomistic topology file
- --out arg
- output file for coarse-grained trajectory
Mapping options:
- --cg arg
- coarse graining mapping definitions (xml-file)
- --map-ignore arg
- list of molecules to ignore separated by ;
- --no-map
- disable mapping and act on original trajectory
Trajectory options:
- --trj arg
- atomistic trajectory file
- --begin arg (=0)
- skip frames before this time
- --first-frame arg (=0)
- start with this frame
- --nframes arg
- process the given number of frames
AUTHORS¶
Written and maintained by the VOTCA Development Team <devs@votca.org>
This Manual Page was converted from t2t format to the this format by txt2tags
(
http://txt2tags.org) ! The t2t file was extracted from 'csg_map --help' by
help2t2t (version 1.2.4 )
COPYRIGHT¶
Copyright 2009-2011 The VOTCA Development Team (
http://www.votca.org)
Licensed under the Apache License, Version 2.0 (the "License"); you
may not use this file except in compliance with the License. You may obtain a
copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software distributed
under the License is distributed on an "AS IS" BASIS, WITHOUT
WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
License for the specific language governing permissions and limitations under
the License.
