NAME¶
csg_density - Part of the VOTCA package
SYNOPSIS¶
csg_density [
OPTION] [
OPTIONPARAMETERS]
DESCRIPTION¶
Calculates the mass density distribution along a box axis or radial density
profile from reference point
Please visit the program site at __
http://www.votca.org__.
OPTIONS¶
Allowed options:
- -h [ --help ]
- produce this help message
- --top arg
- atomistic topology file
Mapping options:
- --cg arg
- [OPTIONAL] coarse graining mapping definitions (xml-file). If no file is
given, program acts on original trajectory
Specific options::
- --axis arg (=r)
- [x|y|z|r] density axis (r=spherical)
- --bins arg (=50)
- bins
- --out arg
- Output file
- --rmax arg
- rmax (default for [r] =min of all box vectors/2, else l )
- --scale arg (=1)
- scale factor for the density
- --molname arg (=*)
- molname
- --filter arg (=*)
- filter bead names
- --ref arg
- reference zero point
Trajectory options:
- --trj arg
- atomistic trajectory file
- --begin arg (=0)
- skip frames before this time
- --first-frame arg (=0)
- start with this frame
- --nframes arg
- process the given number of frames
AUTHORS¶
Written and maintained by the VOTCA Development Team <devs@votca.org>
This Manual Page was converted from t2t format to the this format by txt2tags
(
http://txt2tags.org) ! The t2t file was extracted from 'csg_density --help'
by help2t2t (version 1.2.4 )
COPYRIGHT¶
Copyright 2009-2011 The VOTCA Development Team (
http://www.votca.org)
Licensed under the Apache License, Version 2.0 (the "License"); you
may not use this file except in compliance with the License. You may obtain a
copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software distributed
under the License is distributed on an "AS IS" BASIS, WITHOUT
WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
License for the specific language governing permissions and limitations under
the License.
