NAME¶
vcf-merge - merge the bgzipped and tabix indexed VCF files
SYNOPSIS¶
merge-vcf [
OPTIONS]
file1.vcf file2.vcf.gz ...
>
out.vcf
DESCRIPTION¶
About: Merge the bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf;
tabix
-p vcf file.vcf.gz)
OPTIONS¶
- -c, --chromosomes <list|file>
- Same as -r, left for backward compatibility. Please do not use as
it will be dropped in the future.
- -d, --remove-duplicates
- If there should be two consecutive rows with the same chr:pos, print only
the first one.
- -H, --vcf-header <file>
- Use the VCF header
- -h, -?, --help
- This help message.
- -r, --regions <list|file>
- Do only the given regions (comma-separated list or one region per line in
a file).
- -s, --silent
- Try to be a bit more silent, no warnings about duplicate lines.