NAME¶
travis - Trajectory Analyzer and Visualizer
SYNOPSIS¶
travis [
options] [
file]
DESCRIPTION¶
travis is a Trajectory Analyzer and Visualizer (TRAVIS), a free tool for
analyzing and visualizing trajectories from all kinds of Molecular Dynamics or
Monte Carlo simulations. The aim of
TRAVIS is to collect as many
analyses as possible in one program, creating a powerful tool and making it
unnecessary to use many different programs for evaluating simulations. This
should greatly rationalize and simplify the workflow of analyzing
trajectories.
OPTIONS¶
If only one parameter is specified, it is assumed to be the name of a trajectory
file.
The program supports the following options:
- -p file
- Loads position data from the specified trajectory file. The file
format may be XYZ (.xyz), PDB (.pdb), LAMMPS (.lmp) or DLPOLY (file name
HISTORY without an extension). If this option is not set, the
trajectory file to open will be asked for.
- -i file
- Reads input from the specified text file.
- -stream
- Treats input trajectory as a stream (e.g. named pipe)
- -config file
- Load the specified configuration file.
- -showconf
- Shows a tree structure of the configuration file.
- -writeconf
- Writes the default configuration file.
- -nocolor
- Execute in monochrome mode.
- -dimcolor
- Uses dim instead of bright colors.
- -verbose
- Show detailed information about what's going on.
- -help, -?
- Show help screen.
FILES¶
- travis.log, #1#travis.log, #2#travis.log, ...
- Session log file(s).
- travis.conf, ~/travis.conf
- Configuration file(s).
BUGS¶
Never do run more than one instance of TRAVIS in the same directory at
the same time as every instance will try to access the same log file and at
least one of it will crash.
CITATION¶
Please cite
TRAVIS as follows:
- M. Brehm and B. Kirchner: "TRAVIS - A free Analyzer and Visualizer
for Monte Carlo and Molecular Dynamics Trajectories", J. Chem. Inf.
Model., 2011, 51(8), pp 2007-2023, DOI 10.1021/ci200217w.
AUTHORS¶
This manual page was written by
Daniel Leidert
<dleidert@debian.org> for the Debian GNU/Linux system (but may be used
by others).