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other versions
- jessie 1.4.1+dfsg-2
- jessie-backports 2.4.0+dfsg-8~bpo8+1
- stretch 2.3.1+dfsg-4
- testing 2.4.0+dfsg-11
- stretch-backports 2.4.0+dfsg-11~bpo9+1
- unstable 2.4.0+dfsg-11
| TREE_RECON(1) | User Commands | TREE_RECON(1) |
NAME¶
tree_recon - Tree reconstruction SYNOPSIS- tree_recon [OPTIONS] -m IN.DIST
- Reconstruct phylogenetic tree from Phylip matrix IN.DIST.
-h, --help
- Displays this help message.
--version
- Display version information
- Input / Output:
-m, --matrix FILE
- Name Phylip distance matrix file. Must contain at least three species. Valid filetype is: dist.
-o, --out-file FILE
- Path to write output to. Valid filetypes are: dot and newick. Default: tree.dot.
- Algorithm Options:
-b, --build METHOD
- Tree building method. nj: neighbour-joining, min: UPGMA single linkage, max: UPGMA complete linkage, avg: UPGMA average linkage, wavg: UPGMA weighted average linkage. Neighbour-joining creates an unrooted tree. We root that tree at the least joined pair. One of nj, min, max, avg, and wavg. Default: nj.
- For questions or comments, contact:
- Tobias Rausch <rausch@embl.de>
- SeqAn Homepage:
- tree_recon version: 1.02 Last update July 17, 2012
| September 2014 | tree_recon 1.4.1+dfsg |