NAME¶

masai_indexer - Masai Indexer SYNOPSIS

masai_indexer [OPTIONS] <GENOME FILE>

DESCRIPTION

Masai is a fast and accurate read mapper based on approximate seeds and multiple backtracking.

See http://www.seqan.de/projects/masai for more information.

(c) Copyright 2011-2012 by Enrico Siragusa.

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Display version information

Genome Index Options:

Select the genome index type. One of esa, sa, qgram, and fm. Default: sa.

Specify an genome index prefix name. Default: use the genome filename prefix.

Output Options:

Specify a huge temporary folder. Default: use the genome folder.

VERSION

masai_indexer version: 0.7.1 [14053] Last update 2013-05-16